gst script added

nle_cpp/scripts/run_multiple/do_datfin2gst.sh

+#!/bin/bash
+
+source ./do_parameters.sh
+
+min_group_size=10
+fromdir="dat_${nt}"
+target="gst.txt"
+
+# Check if executable is present
+[ -x $executable ] || { echo "Error: executable file '${executable}' not found!"; exit; }
+
+# Check if source directory is present
+[ ! -d ${fromdir} ] && { echo "Directory ${fromdir} does not exist!" ; exit ; }
+
+# Check if target is present
+[ -f ${target} ] && { echo "Terget file ${target} already exist!" ; exit ; }
+
+init_iteration
+while next_iteration; do
+
+  name=$(get_name)
+  source=$fromdir/${name}${suffix}
+  tmpfile=`mktemp -u -p.`
+  #echo ${name}
+
+  # Run simulation
+  ${executable} -$cell -nsize $nsize -nx $nx -ny $ny -it $nt -nt 0 -load $source \
+                -en $en -enl $enl -el $el -kt $kt -mu $mu -g $pgroup \
+                -evap $evap -cond $cond -ipn $ipn -ipl $ipl -ipe $ipe \
+                -gstlog $tmpfile -gstmin $min_group_size \
+                -short ${nle_args} | tee ${name}.txt
+  # check exit code
+  [ ${PIPESTATUS[0]} -eq 0 ] || { rm -r $name ; exit ; }
+
+  post_run $name
+
+  line=`grep "^$nt" $tmpfile`
+  echo "$en $enl $el $line" >> $target
+
+  rm ${name}.txt
+  rm $tmpfile
+
+done